PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013635382.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family LBD
Protein Properties Length: 258aa    MW: 26894.2 Da    PI: 8.2914
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013635382.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601292.2e-40351351100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                     +C aCk+lrrkC+++C++apyf +eq ++ fa+vhk+FGasn++kll ++p ++r+da+ +++yeA+ar+rdP+yG+v++i++lqqq+ +l+ae+
  XP_013635382.1  35 PCGACKFLRRKCVPGCIFAPYFDSEQgSAYFAAVHKVFGASNISKLLLHIPVHRRSDAVVTICYEAQARIRDPIYGCVAHIFALQQQVVNLQAEV 129
                     7***********************998899***************************************************************** PP

          DUF260  95 allkee 100
                     ++++++
  XP_013635382.1 130 SYVQAH 135
                     **9986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.94234136IPR004883Lateral organ boundaries, LOB
PfamPF031952.6E-3935133IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010089Biological Processxylem development
GO:0010311Biological Processlateral root formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MSGGGNTLTS MGGSGCGGGS SGSGGGTSGG GGGGPCGACK FLRRKCVPGC IFAPYFDSEQ  60
GSAYFAAVHK VFGASNISKL LLHIPVHRRS DAVVTICYEA QARIRDPIYG CVAHIFALQQ  120
QVVNLQAEVS YVQAHLASLE LPQPPPPPRP QSQPQLLFLT PPPLSITDLP ASVSPLPSTY  180
DLASTFDQAA SPSSWATQQR RFVDPRHQYG RSLPSSSATL GLGGGNSDLE ALAHELLHRQ  240
GSPPPTATDD SPSRTKSR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00314DAPTransfer from AT2G45420Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013635382.10.0PREDICTED: LOB domain-containing protein 18-like
SwissprotO221311e-122LBD18_ARATH; LOB domain-containing protein 18
TrEMBLA0A0D3C6D90.0A0A0D3C6D9_BRAOL; Uncharacterized protein
STRINGBra040311.1-P1e-140(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10828359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45420.11e-111LOB domain-containing protein 18